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From: Kenneth Brun Nielsen on 28 Oct 2009 04:56 Hi all, I'm trying to install http://ab-initio.mit.edu/wiki/index.php/H5utils, but while configuring ( ./configure) I get the error: "configure: error: hdf5 libraries are required for compilation" I am pretty sure, I already installed the HDF5 library (from the link at the same site), but I guess I should "tell" the H5utils where it is installed (?) Can someone give me a crash course on how these dependencies work? Best regards, Kenneth
From: Marcel Bruinsma on 28 Oct 2009 06:14 Am Mittwoch, 28. Oktober 2009 09:56, Kenneth Brun Nielsen a écrit : > I'm trying to install http://ab-initio.mit.edu/wiki/index.php/H5utils, > but while configuring ( ./configure) I get the error: > > "configure: error: hdf5 libraries are required for compilation" > > I am pretty sure, I already installed the HDF5 library (from the link > at the same site), but I guess I should "tell" the H5utils where it is > installed (?) Add the absolute pathname of the directory were the hdf5 libraries have been installed to /etc/ld.so.conf (on some systems you may have to create a new file /etc/ld.so.conf.d/hdf5.conf, wich contains the path(s)), then run ldconfig(8). If the error remains, try ./configure LDFLAGS='-L<path-to-hdf5-libraries>' -- printf -v email $(echo \ 155 141 162 143 145 154 142 162 165 151 \ 156 163 155 141 100 171 141 150 157 157 056 143 157 155|tr \ \\\\) # Live every life as if it were your last! #
From: Kenneth Brun Nielsen on 28 Oct 2009 06:40 On 28 Okt., 11:14, Marcel Bruinsma <m...(a)nomail.afraid.org> wrote: Thanks Marcel. > Add the absolute pathname of the directory were the hdf5 libraries > have been installed to /etc/ld.so.conf (on some systems you may have > to create a new file /etc/ld.so.conf.d/hdf5.conf, wich contains the > path(s)), then run ldconfig(8). But is this "healthy"? What if the libraries affect the performance/ stability of other programs? > If the error remains, try > ./configure LDFLAGS='-L<path-to-hdf5-libraries>' OK. If I do this and succeed with installation, should I then use the LD_LIBRARY_PATH variable before program execution? /Kenneth
From: Marcel Bruinsma on 28 Oct 2009 07:24 Am Mittwoch, 28. Oktober 2009 11:40, Kenneth Brun Nielsen a écrit : > On 28 Okt., 11:14, Marcel Bruinsma <m...(a)nomail.afraid.org> wrote: > >> Add the absolute pathname of the directory were the hdf5 libraries >> have been installed to /etc/ld.so.conf (on some systems you may have >> to create a new file /etc/ld.so.conf.d/hdf5.conf, wich contains the >> path(s)), then run ldconfig(8). > > But is this "healthy"? What if the libraries affect the performance/ > stability of other programs? Other programs are not affected. ldconfig updates the cache used by ld.so(8) (ld-linux.so) to locate libraries. Only libraries needed by a program are loaded. >> If the error remains, try >> ./configure LDFLAGS='-L<path-to-hdf5-libraries>' > > OK. If I do this and succeed with installation, should I then use the > LD_LIBRARY_PATH variable before program execution? Yes, that should work too. (If necessary, use 'ldd -v path-to-program' to see which libraries a program needs.) If the hdf5 lib is below your home directory, use LD_LIBRARY_PATH. -- printf -v email $(echo \ 155 141 162 143 145 154 142 162 165 151 \ 156 163 155 141 100 171 141 150 157 157 056 143 157 155|tr \ \\\\) # Live every life as if it were your last! #
From: Vítor De Araújo on 28 Oct 2009 11:05
On Wed, 28 Oct 2009 01:56:46 -0700 (PDT) Kenneth Brun Nielsen <kenneth.brun.nielsen(a)googlemail.com> wrote: > I am pretty sure, I already installed the HDF5 library (from the link > at the same site), but I guess I should "tell" the H5utils where it is > installed (?) Perhaps you haven't installed the development (header) files... -- VÃtor De Araújo |