word occurence counting (DNA)
in [Matlab]
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From: ambrosia nightwish on 31 Mar 2010 17:36 Hello, how can i calculate the frequencies of appearance of the words with K-length walking through a DNA sequence, I want to find the frequency for each path i walk
From: us on 31 Mar 2010 17:45 "ambrosia nightwish" <mess_imen(a)yahoo.fr> wrote in message <hp0f8k$snf$1(a)fred.mathworks.com>... > Hello, > how can i calculate the frequencies of appearance of the words with K-length walking through a DNA sequence, I want to find the frequency for each path i walk what have YOU done so far to solve YOUR particular problem... us
From: ambrosia nightwish on 2 Apr 2010 11:15 I used FCGR toolbox to calculate the frequency of appearance of all the words with K length , I obtained a final matrix of frequencies.The purpose is to find the frequency of every word reads during the process of calculation.
From: us on 2 Apr 2010 11:30 "ambrosia nightwish" <mess_imen(a)yahoo.fr> wrote in message <hp51me$adm$1(a)fred.mathworks.com>... > I used FCGR toolbox to calculate the frequency of appearance of all the words with K length , I obtained a final matrix of frequencies.The purpose is to find the frequency of every word reads during the process of calculation. but then - have you not already solved the problem(?)... otherwise, show a small input/output example... us
From: ambrosia nightwish on 2 Apr 2010 11:45 no not yet
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