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From: TideMan on 10 May 2010 17:11
On May 11, 8:53 am, "Ali Culp" <alic...(a)hotmail.com> wrote:
> > Well why not simply reproduce exactly what you do in DOS?
> > system('dcm2nii -o C:\Vesta C:\Vesta')
> > This assumes you have dcm2nii in the path.
> > If not, then assuming dcm2nii.exe is in the directory, you could do
> > this:
> > pgm='"C:\Documents and Settings\Administrator\Desktop\Ali\mricron
> > \dcm2nii"';
> > then:
> > system([pgm ' -o C:\Vesta C:\Vesta'])
> > Note: I think you'll need double quotes because of the spaces in the
> > directory name.
>
> The problem is there are TWO commands that I have to give DOS...the first is to change where it's looking for the file >>cd C:\Documents...\mricron and the second is to tell it to run the dcm2nii program >>dcm2nii -o C:\Vesta C:\Vesta. Is there a way that I can do something like this in matlab: >>system('command 1','command 2')? If so let me know how!!

Well, you can cd in Matlab first, do your calcs, then cd back:
oldpth=pwd;
cd('C:\Documents...\mricron')
system('dcm2nii -o C:\Vesta C:\Vesta')
cd(oldpth)

From: Ali Culp on 10 May 2010 18:28
Wow so simple.
Thanks!
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