From: JoeBloe on
On 24 Oct 2006 06:32:01 -0700, "Radial" <radisha00(a)hotmail.com> Gave
us:

>I got a response. Firstly, I had to id names of people I knew who were
>in the security services. They wanted to check my connections, my
>validity and legitimacy. Nationality was not important though country
>of operation and area of expertise clearly was. There is someone at
>the other end who is playing a joke but also being serious.


The joke is on you. You ARE the joke.
What a joke, you are.
From: lucasea on

"John Larkin" <jjlarkin(a)highNOTlandTHIStechnologyPART.com> wrote in message
news:3g2tj2lhua1fap95hmds1gr987qu2vo90f(a)4ax.com...
>
> My only real suggestion here has been that evolution should be able to
> optimize evolution itself: evolution evolves. And the implications of
> that are manifold, and lead to some ideas that produce some
> interestingly hostile reactions.

Interesting thought. My first response is to ask what you propose as the
mechanism for that. Evolution is so passive, that it's hard to imagine any
form of active control. There are two possible points of control that I
see--the mutation rate, and the survivability advantage due to any
particular mutation. As I understand it, mutations are based on 3 general
chemistries: 1) photochemistry of nucleobases, 2) O2 (and other
free-radical) chemistry of nucleobases, and 3) simple mis-transcription. I
do not know in what proportions these mix. It's not clear how the first two
can be manipulated without a sweeping change, for example to other
nucleobases besides ACGT. All three are subject to repair mechanisms in the
body of the lifeform, and this might be one point of active control over the
rate of evolution. Finally, it's not clear how evolution would exert any
control over the survivability advantage of a particular mutation, since the
mutations are supposed to be, by definition, random.

However, it is possible that evolution has already selected for some sort of
optimum rate of evolution. Considering there are probably billions of
mutations for every one mutation that is "productive", and considering that
a mutation probably has a far, far greater chance of causing damage than
good, there will be a limit to how fast productive mutations can crop up,
without having so many catastrophic mutations that the species simply cannot
survive. If an organism mutates at too rapid a rate, it simply won't even
survive one generation because it will likely encounter so many destructive
mutations. This may be how we have evolved a DNA repair mechanism, and the
evolved need to have some rate of uncorrected mutations may have set limits
on the effectiveness of that repair mechanism. This then sets an upper
limit on the rate of "productive evolution". In order to assess this
against the actual rate of evolution, it would take some serious attempts at
estimating the productive mutation-to-total mutation ratio, as well as the
destructive mutation-to-total mutation ratio. Both of these would probably
also have to take account of the *degree* of constructiveness or
destructiveness of a particular mutation--so that a mutation that instantly
kills the organism is counted as being far more influential than one that
slightly decreases the chances that an offspring several generations hence
will reach child-rearing age. Considering, however, that I believe current
thought is that evolution happens by punctuated equilibrium, it would be
difficult to assess the long-term average rate of productive mutations to
assess any such attempt to quantitate the "maximum plausible rate of
evolution."

Anyway, it is an interesting thought, and one that I have not heard
biologists address.

Eric Lucas


From: Jonathan Kirwan on
On Tue, 24 Oct 2006 19:23:00 -0700, John Larkin
<jjlarkin(a)highNOTlandTHIStechnologyPART.com> wrote:

>On Tue, 24 Oct 2006 17:47:01 +0100, "T Wake"
><usenet.es7at(a)gishpuppy.com> wrote:
>
>>For every hundred thousand crackpot ideas there is one brilliant one. How
>>should people react to new ideas?
>
>By *thinking* about them!

When given some reason to.

Jon
From: John Larkin on
On Wed, 25 Oct 2006 03:07:31 GMT, <lucasea(a)sbcglobal.net> wrote:

>
>"John Larkin" <jjlarkin(a)highNOTlandTHIStechnologyPART.com> wrote in message
>news:3g2tj2lhua1fap95hmds1gr987qu2vo90f(a)4ax.com...
>>
>> My only real suggestion here has been that evolution should be able to
>> optimize evolution itself: evolution evolves. And the implications of
>> that are manifold, and lead to some ideas that produce some
>> interestingly hostile reactions.
>
>Interesting thought. My first response is to ask what you propose as the
>mechanism for that.

Mutation and natural selection, of course. If that was enough to give
us kidneys and eyeballs and brains, it's surely enough to fine-tune
the hardware of evolution itself.

>Evolution is so passive, that it's hard to imagine any
>form of active control.

Circular argument. Try imagining.

>There are two possible points of control that I
>see--the mutation rate, and the survivability advantage due to any
>particular mutation. As I understand it, mutations are based on 3 general
>chemistries: 1) photochemistry of nucleobases, 2) O2 (and other
>free-radical) chemistry of nucleobases, and 3) simple mis-transcription. I
>do not know in what proportions these mix. It's not clear how the first two
>can be manipulated without a sweeping change, for example to other
>nucleobases besides ACGT. All three are subject to repair mechanisms in the
>body of the lifeform, and this might be one point of active control over the
>rate of evolution.

Yes, that's basic. The natural mutation rate is too high, and most
mutations are too destructive, so repair mechanisms evolve to optimize
the mutation rate. Evolution begins to manage itself. The optimum
"crude" mutation rate, the rate of gross random damage to DNA by means
of radiation and such, may well be zero. There are better ways to
shuffle cards than by blasting the deck with a shotgun.

>Finally, it's not clear how evolution would exert any
>control over the survivability advantage of a particular mutation, since the
>mutations are supposed to be, by definition, random.

That definition is dogma. DNA may have better ideas. Species that
evolve better will, err, evolve better, won't they? You can't argue
with that sort of reasoning.

>However, it is possible that evolution has already selected for some sort of
>optimum rate of evolution. Considering there are probably billions of
>mutations for every one mutation that is "productive", and considering that
>a mutation probably has a far, far greater chance of causing damage than
>good, there will be a limit to how fast productive mutations can crop up,
>without having so many catastrophic mutations that the species simply cannot
>survive. If an organism mutates at too rapid a rate, it simply won't even
>survive one generation because it will likely encounter so many destructive
>mutations. This may be how we have evolved a DNA repair mechanism, and the
>evolved need to have some rate of uncorrected mutations may have set limits
>on the effectiveness of that repair mechanism. This then sets an upper
>limit on the rate of "productive evolution".

It may also be that evolution should lowpass filter the selection
environment. A few cold winters, or a few millenia of ice age, should
not make us adapt too well to cold if the adaptation will kill us when
it gets warm.

> In order to assess this
>against the actual rate of evolution, it would take some serious attempts at
>estimating the productive mutation-to-total mutation ratio, as well as the
>destructive mutation-to-total mutation ratio. Both of these would probably
>also have to take account of the *degree* of constructiveness or
>destructiveness of a particular mutation--so that a mutation that instantly
>kills the organism is counted as being far more influential than one that
>slightly decreases the chances that an offspring several generations hence
>will reach child-rearing age. Considering, however, that I believe current
>thought is that evolution happens by punctuated equilibrium, it would be
>difficult to assess the long-term average rate of productive mutations to
>assess any such attempt to quantitate the "maximum plausible rate of
>evolution."

I think there is some evidence, at least in bacteria, that the
mutation rate increases in times of stress. That would be another
self-optimization: take risks when necessary. There are potentially
many more.

If you believe in evolution, it seems to me that you must believe that
evolution works to optimize the mechanisms of evolution itself, rather
than sticking to the passive random mutation/selection model. It
further seems to me that that course is imperative as long as it's not
physically impossible, and so long as it has adaptive advantages.

I believe in evolution.

>
>Anyway, it is an interesting thought, and one that I have not heard
>biologists address.
>

Thank you for thinking with me. This is the first time anyone here has
tried.

John

From: Haude Daniel on
In article <49esj2l46b3mbf9ufjg7d6d886j4ag2lh6(a)4ax.com>, John Larkin wrote:

> I keep telling the kids that they're not lazy enough. They get a
> problem, conceive a solution, and plow in with enormous energy to
> implement it. I look at a problem, consider various solutions, and
> keep rejecting the ones that look like too much work, until I come
> across some core simplicity that makes it easy. Or I change the rules,
> ditto.

Same here. I sometimes procrastinate for days while working on a
difficult design. The ideas are all there, they just need to
ferment a while (that's what I call it. My colleagues,
especially the Japanese guy who is constantly on the brink of
dying from overwork, think I'm a bit funny but they all have
high regard for my designs).

Recently I did a new mechanical design, lots of well-fermented
ideas and all, and the parts just came back from the machine
shop. A real engineeering gem, if I may say so, and works like a
charm.

However, while waiting for the shop to finish I suddenly hatched
a completely new design that definetely solves the problem that
the current model is only hoped to solve *) in a completely
different, more elegant way. Fewer parts and easier to
manufacture to boot. Colleagues ask me why I didn't design it
that way in the first place. Answer, I couldn't possibly have
done it without first doing the other thing. I just wasn't there
yet.

BTW, I'm neither a mechanical nor an electrical engineer. I'm a
physicist with an engineering streak which, by now, exceeds my
interest in scientific work. But since I only work among
scientists and not engineers, my stuff may seem to be a bit more
ingenious than it actually is. It's definetely better than
what's on the (very small and limited) market, which is of
course also mostly designed by physicists and not engineers. But
who cares. I certainly don't. Among the blind, the one-eyed is
king.

--Daniel

*) We'll see when the thing is down the cryostat in UHV.